Proteomics & Metabolomics Shared Resource

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Educational Resources

Mass Spectrometry for Proteomics Applications

Instrument and technical application notes

• Product & Technical Literature: http://www3.appliedbiosystems.com/sup/gl/search/results.htm
• 4000 QTRAP LC/MS/MS System: http://www3.appliedbiosystems.com/cms/groups/psm_marketing/documents/generaldocuments/cms_040200.pdf

 

Tools

MASCOT
Online database search for protein ID
http://www.matrixscience.com/

BLAST
NCBI Basic Local Alignment Search Tool
http://blast.ncbi.nlm.nih.gov/Blast.cgi

Expasy
Proteomics tools
http://us.expasy.org/tools/

 

Metabolomics applications and tools

Application notes

• For UPLC: http://www.waters.com/waters/nav.htm?cid=514523&lset=1&locale=en_US
• For QTOF Premiere: http://www.waters.com/waters/nav.htm?locale=en_US&cid=513682

 

Data Integration

• Scripps Center for Mass Spectrometry (XCMS): http://masspec.scripps.edu/xcms/xcms.php
• MetaboAnalyst.ca: http://www.metaboanalyst.ca/MetaboAnalyst/faces/Home.jsp
  

 

Biomarker Identification Tools

• Biological Magnetic Resonance Data Bank: http://www.bmrb.wisc.edu/metabolomics/
• Madison Metabolomics Consortium Database: http://mmcd.nmrfam.wisc.edu/

 

Metabolic Pathway Databases:

• Mass TRanslator into Pathways: http://mips.gsf.de/proj/metabolomics/start.html
• ChemSpider: http://www.chemspider.com/
• KEGG (Kyoto Encyclopedia of Genes and Genomes): http://www.genome.jp/kegg/
• MetaboAnalyst.ca: http://www.metaboanalyst.ca/MetaboAnalyst/faces/Home.jsp
• Human Metabolome Database: http://www.hmdb.ca/